Transcript 55571 | MetamORF

Transcript

ID CARD

MetamORF ID

55571

ENSMUST00000072866

Name

Ubap1-201

Strand

Biotype

protein_coding

Start-end positions

41348996-41390525

CDS Start-stop positions

41366897-41388821

CDS Relative positions

Sequences

Transcript sequence

TGA ...

Genome browsers

UCSC

Gene

NCBI:67123

Aliases

2700092A01Rik,
ENSMUSG00000028437, MGI:2149543, NAG20,
NCBI:67123, OFF:Ubap1, Ubap,
UBAP-1, Ubap1

Chr 4

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
163262	87	CTG ...	LTA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
56973	72	CTG ...	LVV ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	sORF Upstream	Brain, Liver, MEF, Neutrophil, Testis, v6-5
58383	57	GTG ...	VTV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	sORF Upstream	Brain, Neutrophil, Testis, v6-5
57501	69	GTG ...	VVA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	sORF Upstream	Liver, MEF, Neutrophil, Testis, v6-5
150380	51	CTG ...	LCY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
824307	39	ATG ...	MCR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
703	42	TTG ...	LCP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain
55570	78	GTG ...	VVL ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	sORF Upstream	Brain, Liver, MEF, Neutrophil, Testis, v6-5
158763	39	ATG ...	MRR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
825911	48	CTG ...	LLT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
826277	33	GTG ...	VKR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
58639	87	ATG ...	MAA ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	sORF Upstream	Brain, Liver, MEF, Neutrophil, Testis, v6-5
823832	45	CTG ...	LTS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
154046	45	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
164210	102	TTG ...	LAS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
146315	54	ATG ...	MTS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF
58540	66	GTG ...	VAT ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	sORF Upstream	Brain, Liver, MEF, Neutrophil, Testis, v6-5

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