Transcript 55206 | MetamORF

Transcript

ID CARD

MetamORF ID

55206

ENSMUST00000196316

Name

Ccna2-205

Strand

Biotype

protein_coding

Start-end positions

36565978-36571551

CDS Start-stop positions

36566234-36570094

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

NCBI:12428

Aliases

AA408589,
Ccn-1, Ccn1, Ccna,
Ccna2, Cyca, CycA2,
ENSMUSG00000027715, MGI:108069, NCBI:12428,
OFF:Ccna2

Chr 3

ORFs

52 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1224249	93	AAG ...	KRH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
503370	81	CTG ...	LSL ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil, R1E, v6-5
503710	180	ATG ...	MSM ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, R1E, v6-5
1220895	63	ATC ...	ISS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1222084	42	AAG ...	KNI ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1056674	45	TTG ...	LCI ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil
1223345	156	AAG ...	KRP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF Upstream	E14
507972	264	ATG ...	MLT ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E, v6-5
505530	168	CTG ...	LLV ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, R1E, v6-5
543735	39	CTG ...	LNH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1221593	54	AAG ...	KYL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1222187	30	TTG ...	LLL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
541818	153	CTG ...	LDI ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E, v6-5
1221650	207	AAG ...	KRP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF Upstream	E14
1171188	33	TTG ...	LID ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, v6-5
506148	132	CTG ...	LPS ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, R1E, v6-5
1224298	66	AAG ...	KKT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1373591	60	GTG ...	VKM ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, R1E
1056466	231	GTG ...	VDE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF Upstream	E14, MEF, Neutrophil, R1E
536043	54	TTG ...	LRW ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, v6-5
1220680	36	AAG ...	KSL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
542495	84	ATG ...	MKY ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, R1E, v6-5
542578	81	ATG ...	MPN ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, v6-5
508207	174	CTG ...	LSH ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E, v6-5
542337	120	TTG ...	LWT ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E, v6-5
507893	228	TTG ...	LLE ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E, v6-5
505757	165	CTG ...	LVL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, R1E, v6-5
1056909	33	CTG ...	LSL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, Neutrophil, R1E
535994	48	CTG ...	LTI ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, R1E, v6-5
55205	180	GTG ...	VDE ...	Ribo-seq	GTG		10	sORFs_org_Mouse	sORF Upstream	3T3, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1220911	30	ACG ...	TIP ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1058018	114	CTG ...	LAF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF Upstream	Brain, E14, MEF, Neutrophil, R1E, v6-5
507999	219	CTG ...	LPS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
502633	111	ATG ...	MKQ ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, R1E, v6-5
1374158	39	ATG ...	MQL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, R1E
1175672	228	GTG ...	VVS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, v6-5
1218304	39	ATA ...	ILQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1222972	102	AAG ...	KRL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
508212	225	CTG ...	LEL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
540106	57	ATG ...	MKY ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, MEF, R1E, v6-5
1173067	54	ATG ...	MPW ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, R1E, v6-5
542781	75	CTG ...	LTI ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E, v6-5
507662	261	CTG ...	LTR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
1172726	33	GTG ...	VFL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1056357	165	CTG ...	LAF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	Neutrophil
1218399	30	ATA ...	IDS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
505365	174	ATG ...	MSL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, R1E, v6-5
507346	117	ATG ...	MWM ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, R1E, v6-5
542293	216	CTG ...	LCC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Neutrophil, R1E, v6-5
535903	69	TTG ...	LWT ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
1223797	81	AAG ...	KYL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1224095	147	ATA ...	IPW ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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