Transcript 545080

Transcript

ID CARD

MetamORF ID

545080

ENSMUST00000130834

Name

Tmeff1-203

Strand

Biotype

protein_coding

Start-end positions

48585551-48662470

CDS Start-stop positions

-48662085

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:230157

Aliases

A830033E11,
ENSMUSG00000028347, M7365, MGI:1926810,
NCBI:230157, OFF:Tmeff1, Tmeff1,
TR-1, Tr1

Chr 4

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
148412	57	GTG ...	VPY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	R1E
152735	54	GTG ...	VYK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
545845	48	ATG ...	MSA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	3T3
548962	54	ATG ...	MNH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	3T3
550593	75	GTG ...	VGQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	3T3, R1E
547721	57	GTG ...	VMN ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	3T3
157336	39	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	R1E
545079	30	GTG ...	VSA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	3T3
156585	75	CTG ...	LFR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, R1E
547904	33	GTG ...	VWT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	3T3
159906	90	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	R1E
558020	81	CTG ...	LFR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, R1E
551856	36	ATG ...	MEV ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	3T3
551397	81	CTG ...	LSV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	3T3, R1E
558624	60	GTG ...	VYK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3

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