Transcript 5419 | MetamORF

Transcript

ID CARD

MetamORF ID

5419

ENSMUST00000209277

Name

Vps35-203

Strand

Biotype

retained_intron

Start-end positions

85269502-85274503

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:65114

Aliases

AI647796,
ENSMUSG00000031696, Mem3, MGI:1890467,
NCBI:65114, OFF:Vps35, Vps35

Chr 8

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
80090	135	TTG ...	LNT ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, E14, R1E, Spleen_B_cell, Testis
1264838	135	AAG ...	KTL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1265994	129	ATT ...	IQD ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1266482	81	ATA ...	IQR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1262385	120	AAG ...	KTS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1266468	96	TTG ...	LLA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
81088	42	CTG ...	LLR ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
917730	108	ATG ...	MNR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
242940	96	CTG ...	LVE ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
1262543	126	ATC ...	IQK ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1263437	63	ATG ...	MIL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
430350	51	TTG ...	LQL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, R1E, Spleen_B_cell
1263869	57	CTG ...	LTS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1265686	120	ATA ...	IRH ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1263639	168	ACG ...	TKT ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
5418	144	TTG ...	LVS ...	Ribo-seq	TTG	strong	12	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis
238965	93	GTG ...	VEI ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, R1E, Spleen_B_cell
1264642	87	ATC ...	ISG ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1262424	90	ATT ...	IRF ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1264763	105	ATT ...	ILG ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
5425	141	GTG ...	VST ...	Ribo-seq	GTG	weak	13	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis
80447	69	TTG ...	LVF ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, R1E, Spleen_B_cell, Testis, v6-5
78839	78	CTG ...	LPP ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, R1E, Spleen_B_cell, Testis
79530	48	TTG ...	LAF ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, R1E, Spleen_B_cell, Testis
244861	102	TTG ...	LGL ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E, Spleen_B_cell
5448	132	TTG ...	LIQ ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis

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