Transcript 536 | MetamORF

Transcript

ID CARD

MetamORF ID

536

ENSMUST00000001051

Name

S100a6-201

Strand

Biotype

protein_coding

Start-end positions

90612882-90614414

CDS Start-stop positions

90613767-90614322

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

NCBI:20200

Aliases

2A9,
5B10, Cacy, CALCYCLIN,
ENSMUSG00000001025, MGI:1339467, NCBI:20200,
OFF:S100a6, PRA, S100a6

Chr 3

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1375887	246	TTG ...	LPC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF
750206	63	TTG ...	LAF ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
143710	99	CTG ...	LAT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, MEF
893401	36	AGG ...	RSM ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
144272	75	CTG ...	LRH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF Upstream	Brain, MEF, v6-5
535	123	TTG ...	LAL ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, E14, MEF, Neutrophil, Skin_tumor, Testis, v6-5
132726	84	GTG ...	VIS ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, E14, MEF, Neutrophil, NSC, v6-5
894170	72	ATC ...	IRP ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
334	69	ATG ...	MPS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
542381	225	GTG ...	VGS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, E14, MEF
893500	138	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	BMDC
16	33	ATG ...	MIW ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
144992	174	ATG ...	MFV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF Upstream	3T3, Brain
142548	132	GTG ...	VPA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	3T3, Brain
140014	30	ATG ...	MSP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1651028	102	ATG ...	MLA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF Upstream	MEF
138208	30	CTG ...	LAR ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF

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