Transcript 532071

Transcript

ID CARD

MetamORF ID

532071

ENSMUST00000173384

Name

Cyfip1-206

Strand

Biotype

retained_intron

Start-end positions

55897819-55904255

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:20430

Aliases

Cyfip1,
E030028J09Rik, ENSMUSG00000030447, l(7)1Rl,
l71Rl, l7Rl1, MGI:1338801,
mKIAA0068, NCBI:20430, OFF:Cyfip1,
P140SRA-1, P140sra1, pl-1,
Shyc, Sra-1, Sra1

Chr 7

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
589320	33	TTG ...	LQT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
594755	78	TTG ...	LDI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
911908	72	ACG ...	TTV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
594773	87	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
589292	120	CTG ...	LIS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
72993	48	CTG ...	LTD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
598322	66	GTG ...	VPT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
76307	156	CTG ...	LQQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
73712	93	CTG ...	LYN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
76654	102	CTG ...	LTM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
594424	87	TTG ...	LDN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
913546	39	ATC ...	IIL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
594811	45	GTG ...	VTF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
74662	108	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
912732	30	ATA ...	INF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	BMDC
76441	129	CTG ...	LWF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
588512	57	ATG ...	MRS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
913107	99	ACG ...	TSS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
73714	99	TTG ...	LDL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
593588	162	GTG ...	VRT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
597466	108	TTG ...	LRS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E

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