Transcript 5316 | MetamORF

Transcript

ID CARD

MetamORF ID

5316

ENSMUST00000170796

Name

Nob1-208

Strand

Biotype

retained_intron

Start-end positions

107412486-107421562

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:67619

Aliases

1700021I09Rik,
ART-4, ENSMUSG00000003848, MGI:1914869,
NCBI:67619, Nob1, Nob1p,
OFF:Nob1, Psmd8bp1

Chr 8

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1263603	54	CTG ...	LNP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1262332	54	AGG ...	RRR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
604839	48	CTG ...	LKL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
430949	54	GTG ...	VDN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1264832	48	ACG ...	TMG ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
240333	45	ATG ...	MGP ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
605999	42	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1824817	87	TTG ...	LHM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
428818	90	ATG ...	MGP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	R1E
1825389	117	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
237395	159	GTG ...	VFA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, R1E
430682	54	CTG ...	LWT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
428662	156	GTG ...	VDR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1823874	81	TTG ...	LQR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
430649	93	CTG ...	LMG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
244725	96	TTG ...	LEQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
236130	66	TTG ...	LGA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
1824572	120	CTG ...	LEF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
245396	117	GTG ...	VSV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
5315	30	TTG ...	LHP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
1477719	51	ATG ...	MTM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
1264411	132	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
241662	87	CTG ...	LQV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
431197	45	TTG ...	LWE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
249209	111	GTG ...	VTI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
1262987	75	ATC ...	ISA ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
428178	30	TTG ...	LTV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
248904	126	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
247824	36	GTG ...	VTP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
246194	156	GTG ...	VFC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
82257	222	CTG ...	LTE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
1824319	72	ATG ...	MTS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
80334	195	CTG ...	LRL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E

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