Transcript 52946 | MetamORF

Transcript

ID CARD

MetamORF ID

52946

ENSMUST00000198562

Name

Ints3-204

Strand

Biotype

retained_intron

Start-end positions

90407902-90433622

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:229543

Aliases

C77668,
ENSMUSG00000027933, Ints3, MGI:2140050,
NCBI:229543, OFF:Ints3

Chr 3

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1372969	39	CTG ...	LQP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1174480	57	TTG ...	LFL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
1646846	33	GTG ...	VEF ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
52945	60	CTG ...	LWK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, Testis, v6-5
540069	33	TTG ...	LHD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	NSC, v6-5
139229	51	ATG ...	MFD ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, v6-5
134124	33	GTG ...	VWC ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, NSC, v6-5
132749	66	ATG ...	MLL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, v6-5
132217	93	TTG ...	LVR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
128574	63	TTG ...	LLG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
128231	42	TTG ...	LAE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, E14, v6-5
1174737	54	TTG ...	LAS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
132981	111	CTG ...	LCT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
135912	102	TTG ...	LVW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
1171719	57	GTG ...	VHE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
132015	99	GTG ...	VWL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
1174087	111	GTG ...	VRK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
1171320	33	CTG ...	LPR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
138349	120	TTG ...	LPW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
129253	45	ATG ...	MAA ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, MEF, NSC
1171856	45	GTG ...	VVG ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
135684	33	GTG ...	VLP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
135929	87	TTG ...	LWT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
137306	63	CTG ...	LGA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
133307	126	TTG ...	LMI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, v6-5
1172879	48	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
1374345	36	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14

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