Transcript 524450

Transcript

ID CARD

MetamORF ID

524450

ENSMUST00000127096

Name

Por-203

Strand

Biotype

protein_coding

Start-end positions

135725728-135730241

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:18984

Aliases

4933424M13Rik,
CPR, CYPOR, ENSMUSG00000005514,
MGI:97744, NCBI:18984, OFF:Por,
P450R, Por

Chr 5

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
166939	120	TTG ...	LYS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	E14, Liver
1434388	33	CTG ...	LSK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Liver
190254	54	ATG ...	MGC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	BMDC, E14, MEF
169870	81	TTG ...	LPT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	E14, Liver
1663	30	CTG ...	LQT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	BMDC, E14, MEF, v6-5
173419	60	ATG ...	MPT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	E14, MEF
187033	66	ATG ...	MPT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	BMDC, E14, MEF, Spleen_B_cell
181982	111	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	E14, Liver
188591	87	TTG ...	LPT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	BMDC, E14, Liver
170891	48	ATG ...	MGC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	E14, MEF, v6-5
186177	126	TTG ...	LYS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	E14, Liver
186255	117	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	E14, Liver
186755	36	CTG ...	LQT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	BMDC, E14, MEF, Spleen_B_cell, v6-5

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