Transcript 52158 | MetamORF

Transcript

ID CARD

MetamORF ID

52158

ENSMUST00000049093

Name

Txnip-201

Strand

Biotype

protein_coding

Start-end positions

96557960-96561857

CDS Start-stop positions

96558236-96560529

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:56338

Aliases

1200008J08Rik,
AA682105, ENSMUSG00000038393, Hyplip1,
MGI:1889549, NCBI:56338, OFF:Txnip,
Tbp-2, THIF, Txnip,
VDUP1

Chr 3

ORFs

72 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1222397	33	ATT ...	IFF ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
751422	39	CTG ...	LDR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
53227	84	ATG ...	MWT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, Spleen_B_cell
413574	72	ATT ...	IFL ...	Ribo-seq	ATT	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12, E14, Liver
529	81	GTG ...	VAR ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, MEF, Spleen_B_cell, Testis
1221625	135	AAG ...	KCV ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
506567	90	TTG ...	LFE ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14, MEF, Spleen_B_cell
55306	231	TTG ...	LRT ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, MEF, Spleen_B_cell, Testis
52847	165	ATG ...	MAR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, Spleen_B_cell, Testis
893250	48	ACG ...	TSV ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
55123	255	ATG ...	MTS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, Spleen_B_cell, Testis
972382	39	AGG ...	RLK ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
508136	66	CTG ...	LDR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Spleen_B_cell
972751	69	AAG ...	KTA ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
54927	240	ATG ...	MLT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, MEF, Spleen_B_cell, Testis
508693	75	ATG ...	MST ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC, Spleen_B_cell
17160	33	GTG ...	VQT ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, MEF, Spleen_B_cell
52157	234	TTG ...	LRT ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, Spleen_B_cell, Testis
972530	201	AAG ...	KRL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
504690	63	CTG ...	LKA ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14, Liver, Spleen_B_cell
55413	168	TTG ...	LPM ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, MEF, Spleen_B_cell, Testis
505157	51	TTG ...	LGF ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, E14, MEF, Spleen_B_cell
54449	243	ATG ...	MLT ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, Spleen_B_cell, Testis
54875	162	ATG ...	MAR ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, MEF, Spleen_B_cell, Testis
17023	54	GTG ...	VDA ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell
54287	129	GTG ...	VKL ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, Spleen_B_cell, Testis
893884	114	ATA ...	IWL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
508024	87	CTG ...	LET ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Spleen_B_cell
895684	114	ATC ...	ITL ...	Ribo-seq	ATC		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
505736	90	TTG ...	LRK ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14, Liver, MEF, Spleen_B_cell
865378	72	GTG ...	VCQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
894004	87	ACG ...	TMW ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
502988	75	TTG ...	LKL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, E14, Spleen_B_cell
55388	189	TTG ...	LWP ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, R1E, Spleen_B_cell, Testis
505678	78	ATG ...	MDV ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, Spleen_B_cell
54177	108	TTG ...	LRR ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Spleen_B_cell, Testis
505128	36	CTG ...	LTL ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, E14, Liver, MEF, Spleen_B_cell
53505	192	TTG ...	LWP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, Spleen_B_cell, Testis
53577	171	TTG ...	LPM ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, Spleen_B_cell, Testis
893548	117	ATC ...	ITL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
53833	261	GTG ...	VMT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, Spleen_B_cell, Testis
894875	102	AAG ...	KFP ...	Ribo-seq	AAG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
503961	75	TTG ...	LRR ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, MEF, Spleen_B_cell
413492	39	ACG ...	TEA ...	Ribo-seq	ACG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12, E14
505701	81	CTG ...	LMD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, Spleen_B_cell
1219158	51	ACG ...	TTP ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1221632	30	ATC ...	IQH ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
53405	36	CTG ...	LAP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, Spleen_B_cell
54646	240	CTG ...	LTL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, Spleen_B_cell, Testis
505532	120	CTG ...	LVS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14, Liver, Spleen_B_cell
505131	120	CTG ...	LPK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, Spleen_B_cell
893244	63	AGG ...	RWS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
893436	153	AAG ...	KCS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
503851	96	CTG ...	LGE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Spleen_B_cell
895579	150	AAG ...	KCS ...	Ribo-seq	AAG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
51961	42	GTG ...	VSL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, Spleen_B_cell
894155	48	ATC ...	IAP ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
54371	84	GTG ...	VAR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, Spleen_B_cell
1220426	120	AGG ...	RKI ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
895446	45	AAG ...	KGP ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
894802	78	ACG ...	TTL ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1218310	84	AGG ...	RVC ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	sORF Upstream	E14
1220084	48	ACG ...	TPL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1646021	51	ATG ...	MLE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
503567	36	CTG ...	LKL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Liver, R1E, Spleen_B_cell
55240	237	CTG ...	LTL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, MEF, Spleen_B_cell, Testis
896055	198	AAG ...	KRL ...	Ribo-seq	AAG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
894098	36	AGG ...	RHL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
52380	66	TTG ...	LRW ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, Spleen_B_cell, Testis
53258	258	ATG ...	MTS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, Spleen_B_cell, Testis
55529	258	GTG ...	VMT ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, Spleen_B_cell, Testis
507115	42	CTG ...	LSS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, Spleen_B_cell

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