Transcript 521080

Transcript

ID CARD

MetamORF ID

521080

ENSMUST00000134473

Name

Zfp664-204

Strand

Biotype

processed_transcript

Start-end positions

124884569-124888630

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:269704

Aliases

AW060232,
D930038J03Rik, ENSMUSG00000079215, MGI:2442505,
NCBI:269704, OFF:Zfp664, ZFOC1,
Zfp664, Znf664

Chr 5

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
169075	93	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1382075	69	GTG ...	VEA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
61945	45	ATG ...	MLL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Spleen_B_cell, v6-5
173167	48	CTG ...	LED ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
179411	87	ATG ...	MQE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
177187	45	CTG ...	LPW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
180415	75	CTG ...	LWR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
170962	84	ATG ...	MLT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
172167	42	ATG ...	MSC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
177535	78	GTG ...	VLW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
184439	99	GTG ...	VRS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
167529	84	TTG ...	LRV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
176901	57	CTG ...	LWG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
184769	81	TTG ...	LTT ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, v6-5
182559	168	GTG ...	VRS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
168592	45	GTG ...	VMS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
181684	150	CTG ...	LYI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
65272	69	TTG ...	LFV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
173379	45	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14

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