Transcript 52051 | MetamORF

Transcript

ID CARD

MetamORF ID

52051

ENSMUST00000197829

Name

Rabggtb-208

Strand

Biotype

nonsense_mediated_decay

Start-end positions

153908075-153912033

CDS Start-stop positions

153910072-

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:19352

Aliases

ENSMUSG00000038975,
MGI:99537, NCBI:19352, OFF:Rabggtb,
Rabggtb

Chr 3

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
137142	51	ATG ...	MVD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
131190	48	GTG ...	VDL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
130606	84	ATG ...	MRL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
132358	54	ATG ...	MPI ...	Ribo-seq	ATG		7	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
138220	30	TTG ...	LLH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	E14, v6-5
52050	33	ATG ...	MAQ ...	Ribo-seq	ATG		6	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, NSC, Testis
129212	78	CTG ...	LTP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, NSC, v6-5
137759	216	CTG ...	LTV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	E14
129605	42	TTG ...	LLP ...	Ribo-seq	TTG		7	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
128078	54	TTG ...	LMV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
1171305	30	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	v6-5
129927	243	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
1171325	51	TTG ...	LSF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, NSC, v6-5
1373903	48	TTG ...	LGT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	E14, MEF
1374617	57	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	E14
135413	42	TTG ...	LGA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
1172804	90	TTG ...	LGP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	MEF, NSC, v6-5

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