Transcript 51997 | MetamORF

Transcript

ID CARD

MetamORF ID

51997

ENSMUST00000117355

Name

Psmd4-203

Strand

Biotype

protein_coding

Start-end positions

95032705-95042543

CDS Start-stop positions

95033344-95042533

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:19185

Aliases

Af1,
angiocidin, ENSMUSG00000005625, Mcb1,
MGI:1201670, NCBI:19185, OFF:Psmd4,
Psmd4

Chr 3

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
54140	102	CTG ...	LDL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
983748	120	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
130789	30	ATG ...	MSL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
54579	42	ATG ...	MTS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	Testis
52938	87	CTG ...	LML ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
821515	36	CTG ...	LKV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
16669	63	ATG ...	MPS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
17179	51	TTG ...	LYV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
53297	84	ATG ...	MLS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
16942	102	GTG ...	VDP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	Testis
53870	57	CTG ...	LVK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
169	60	CTG ...	LAS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	Testis
51996	30	ATG ...	MAR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
54400	129	GTG ...	VWT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis

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