Transcript 51883 | MetamORF

Transcript

ID CARD

MetamORF ID

51883

ENSMUST00000183463

Name

Elf2-208

Strand

Biotype

nonsense_mediated_decay

Start-end positions

51255230-51326029

CDS Start-stop positions

51294163-51323293

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:69257

Aliases

2610036A20Rik,
A230104O07Rik, AW111824, BB183398,
Elf2, ENSMUSG00000037174, EU32,
MGI:1916507, NCBI:69257, NERF,
NERF-1A, NERF-1B, NERF-2,
OFF:Elf2

Chr 3

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
51882	243	GTG ...	VPA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
129165	60	TTG ...	LWT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
52971	171	CTG ...	LKA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
1172710	75	ATG ...	MDS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1373612	87	GTG ...	VNI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14
52764	90	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
135155	39	CTG ...	LDF ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	NMD sORF Upstream	Brain, MEF
53290	141	GTG ...	VKT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
54072	300	GTG ...	VRA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
536259	45	CTG ...	LSR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
53292	249	CTG ...	LSV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
52271	183	CTG ...	LWE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	MEF, Testis
54365	96	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
52699	126	CTG ...	LNC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
53054	273	GTG ...	VVI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
54486	231	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
1552896	99	GTG ...	VAR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
503005	90	GTG ...	VDS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
1647470	162	TTG ...	LLQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
894586	54	ATG ...	MLR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF Upstream	BMDC
53811	126	CTG ...	LVE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
53887	195	GTG ...	VSL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, Testis
53781	132	TTG ...	LQL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis

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