Transcript 512557

Transcript

ID CARD

MetamORF ID

512557

ENSMUST00000105837

Name

Usp48-202

Strand

Biotype

protein_coding

Start-end positions

137618471-137625291

CDS Start-stop positions

137621190-

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

NCBI:170707

Aliases

2810449C13Rik,
AI115503, BC021769, D330022K21Rik,
ENSMUSG00000043411, MGI:2158502, NCBI:170707,
OFF:Usp48, Usp31, Usp48

Chr 4

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1226073	48	ATG ...	MAA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	E14
1230078	30	ATA ...	IWR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	E14
1225635	36	AAG ...	KMV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14
1224884	111	TTG ...	LNG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	E14
1226840	159	ATT ...	IDN ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
1231795	42	ATA ...	IWR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	E14
1225505	42	ATG ...	MSK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	E14
1226082	60	ATA ...	IIM ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	sORF	E14
1230333	51	CTG ...	LRR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	E14
1230225	258	AAG ...	KSS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1081412	141	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	E14
1228743	126	ATG ...	MSL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	E14
1229583	30	GTG ...	VRR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	E14
1227503	249	TTG ...	LRS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	E14
512556	36	CTG ...	LPC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	E14, Spleen_B_cell
1225320	36	ACG ...	TTS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	sORF	E14
1230915	30	ATA ...	IVD ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF	E14
1226892	30	AAG ...	KIT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14
1226579	192	AAG ...	KWL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1229376	36	AAG ...	KQR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14

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