Transcript 510334

Transcript

ID CARD

MetamORF ID

510334

ENSMUST00000142577

Name

Txlna-206

Strand

Biotype

retained_intron

Start-end positions

129626083-129640640

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:109658

Aliases

2600010N21Rik,
AI425952, AW209241, ENSMUSG00000053841,
Il14, MGI:105968, NCBI:109658,
OFF:Txlna, Txln, Txlna

Chr 4

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
900108	45	ATC ...	IPV ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1655717	39	GTG ...	VHC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1228462	216	CTG ...	LQK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
512834	162	ATG ...	MQP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1228506	33	AGG ...	RSG ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1230299	267	CTG ...	LEK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Liver
1226845	243	AAG ...	KDL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
550613	33	CTG ...	LPH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
510333	72	ATG ...	MTF ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
1427493	258	CTG ...	LCR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
1426988	288	CTG ...	LQV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
1226744	30	AAG ...	KSI ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1231287	276	ATC ...	IQR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1226950	72	AGG ...	RSS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1428776	246	CTG ...	LQT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
1228354	297	CTG ...	LEG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	E14, Liver
511203	30	ATG ...	MTS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1230691	282	GTG ...	VKI ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, Liver
1428263	204	CTG ...	LTA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
509946	30	GTG ...	VPS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
1225339	216	AGG ...	RVQ ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1225521	42	AGG ...	RGT ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1230255	165	AGG ...	RPE ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
824319	204	CTG ...	LPN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14

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