Transcript 509671

Transcript

ID CARD

MetamORF ID

509671

ENSMUST00000140830

Name

Sdcbp-205

Strand

Biotype

protein_coding

Start-end positions

6365713-6385057

CDS Start-stop positions

6377092-

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:53378

Aliases

ENSMUSG00000028249,
MDA-9, MGI:1337026, NCBI:53378,
OFF:Sdcbp, Sdcbp, Sycl,
syntenin-1

Chr 4

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
899111	111	CTG ...	LPI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	BMDC
896813	45	AAG ...	KTI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC
896460	87	TTG ...	LFW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	BMDC
897947	66	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC
897286	105	CTG ...	LEH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC
896508	105	ATC ...	IPP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	BMDC
557376	45	ATG ...	MKE ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	3T3, BMDC, E14, MEF, R1E
897210	141	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC
510994	51	GTG ...	VWS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Spleen_B_cell
898057	135	CTG ...	LKY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC
896320	48	ATC ...	ILN ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	sORF	BMDC
509670	39	CTG ...	LQK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Spleen_B_cell
898065	192	AGG ...	RSG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	BMDC
898600	93	AAG ...	KHL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC
898698	75	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC

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