Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

5095

ID

ENSMUST00000033898

Name

Col4a1-201

Strand

-

Biotype

protein_coding

Start-end positions

11198423-11312826

CDS Start-stop positions

11199801-11312599

CDS Relative positions

-

Sequences

Transcript sequence

TTG ...

Gene

ID

NCBI:12826

Aliases

Bru,
Col4a-1, Col4a1, ENSMUSG00000031502,
MGI:88454, NCBI:12826, OFF:Col4a1,
Raw, Svc


Chr 8

ORFs

153 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

609806 75

CTG ...

LAV ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
416619 159

GTG ...

VAH ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, C2C12
614321 195

GTG ...

VSW ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
613026 84

CTG ...

LGL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
612372 300

TTG ...

LGD ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    CDS
    sORF
3T3, E14, v6-5
611057 141

GTG ...

VLK ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
613407 234

CTG ...

LEF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
611627 138

CTG ...

LEK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
5345 90

GTG ...

VTQ ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Skin_tumor
1582375 30

CTG ...

LDF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
613197 204

GTG ...

VAH ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3
611773 84

CTG ...

LER ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
613756 153

CTG ...

LGS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
417012 177

AAG ...

KER ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
614859 270

CTG ...

LEH ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
613639 171

CTG ...

LDL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
610847 177

CTG ...

LEL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
614567 99

ATG ...

MSS ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
612641 186

GTG ...

VTR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
416813 42

AGG ...

RPS ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
612429 252

CTG ...

LDS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
416613 153

AGG ...

RES ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
609962 126

CTG ...

LQH ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
609705 90

GTG ...

VSP ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
615046 300

TTG ...

LAP ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
614837 135

CTG ...

LAR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1519721 30

ATG ...

MLT ...

Ribo-seq
ATG weak 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
614797 102

TTG ...

LAA ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
614633 282

TTG ...

LVK ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
615075 159

GTG ...

VSL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
614344 180

CTG ...

LEQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
416789 111

AAG ...

KRP ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
C2C12
612679 132

GTG ...

VTE ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
613279 102

TTG ...

LVS ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
613193 135

CTG ...

LAK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
603895 84

GTG ...

VTR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
615258 144

CTG ...

LVF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
609647 96

ATG ...

MGQ ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
603254 117

ATG ...

MAF ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
613752 246

CTG ...

LGP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
614067 180

GTG ...

VTR ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
416764 48

AGG ...

RQG ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
416793 33

AAG ...

KET ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
613448 63

CTG ...

LGT ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
5623 129

TTG ...

LTC ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Skin_tumor
417020 249

ATG ...

MSK ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, C2C12, E14
612888 249

CTG ...

LPT ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
605899 60

CTG ...

LAK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
417089 195

TTG ...

LDR ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, C2C12
609670 114

ATG ...

MSS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
614985 246

TTG ...

LQV ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
5407 48

GTG ...

VML ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
614163 231

GTG ...

VPT ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
613785 126

ATG ...

MAL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
613031 216

CTG ...

LDF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
605724 138

CTG ...

LKV ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
608301 60

CTG ...

LGL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
614059 96

CTG ...

LGS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
606558 81

CTG ...

LAH ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
615071 72

GTG ...

VTE ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
613626 216

GTG ...

VLQ ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
614288 162

CTG ...

LGI ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
5335 75

ATG ...

MAL ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Skin_tumor
5510 78

CTG ...

LAC ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Skin_tumor
614158 138

GTG ...

VAL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
613050 204

GTG ...

VKW ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
612140 144

CTG ...

LVL ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
605047 63

ATG ...

MGC ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
615137 135

CTG ...

LEK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
614898 276

CTG ...

LDR ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
611794 48

GTG ...

VTE ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
416759 60

ACG ...

TAE ...

Ribo-seq
ACG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
613535 150

CTG ...

LER ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
613983 66

CTG ...

LRV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
607191 126

GTG ...

VCL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
609305 135

CTG ...

LGL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
416779 60

AGG ...

RTQ ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
615151 183

ATG ...

MER ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
615099 255

CTG ...

LEA ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
417027 258

AGG ...

RKK ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
614989 291

TTG ...

LVL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
615506 228

ATG ...

MLE ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
614342 150

CTG ...

LAT ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
5177 48

CTG ...

LDP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
611815 60

GTG ...

VTL ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
5591 75

GTG ...

VGH ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Skin_tumor
615780 267

ATG ...

MDT ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
1569895 132

ATG ...

MEP ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC
5864 84

CTG ...

LAC ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Skin_tumor
614761 219

CTG ...

LVL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
610673 108

CTG ...

LQL ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1109615 48

CTG ...

LGF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
417104 117

GTG ...

VTK ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, C2C12, E14,
MEF
5809 168

CTG ...

LEL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Skin_tumor,
v6-5
612958 54

CTG ...

LAC ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
416809 72

AAG ...

KWK ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
417069 159

AGG ...

RES ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
613529 153

GTG ...

VYP ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
611261 75

GTG ...

VQL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
614542 150

CTG ...

LSF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
416781 192

ACG ...

TPG ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
C2C12
614544 198

ATG ...

MGQ ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
612366 156

GTG ...

VTQ ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
614862 162

TTG ...

LPV ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
615068 231

CTG ...

LKG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
608312 111

CTG ...

LAH ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
607967 93

GTG ...

VPR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
613156 231

GTG ...

VML ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
606837 54

TTG ...

LGF ...

Ribo-seq
TTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
607652 54

CTG ...

LDH ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
5172 57

CTG ...

LDS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
614246 204

TTG ...

LFC ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
613392 48

ATG ...

MAT ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
615723 72

CTG ...

LVL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
614429 141

GTG ...

VLL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
608708 120

CTG ...

LAS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
613788 198

GTG ...

VKG ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
612447 219

CTG ...

LAE ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
603187 99

GTG ...

VSL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
602911 69

GTG ...

VIK ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
612503 261

CTG ...

LAF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
5595 69

TTG ...

LWS ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Skin_tumor
614005 135

TTG ...

LTC ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
5446 144

CTG ...

LER ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Skin_tumor
614172 117

TTG ...

LVP ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
611454 81

CTG ...

LAS ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
5122 69

GTG ...

VST ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Skin_tumor
417067 252

AAG ...

KET ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
5638 111

GTG ...

VTK ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, C2C12, Skin_tumor
1569506 90

ATG ...

MLS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
614843 279

GTG ...

VKK ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
614771 144

ATG ...

MVL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
614819 201

GTG ...

VKL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
615118 120

CTG ...

LGL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
417014 237

ACG ...

TSV ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
614317 168

CTG ...

LDL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1569869 141

GTG ...

VEE ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
614264 171

GTG ...

VNL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
416728 39

AGG ...

RKK ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
613116 186

CTG ...

LGV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
417071 186

AAG ...

KVR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
1108999 39

CTG ...

LAP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
607170 81

TTG ...

LAA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
612690 93

CTG ...

LAI ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1583524 36

GTG ...

VKL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
610799 150

CTG ...

LDS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1748897 288

TTG ...

LDF ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
614417 285

CTG ...

LLV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
5094 162

CTG ...

LEL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Skin_tumor
615751 252

TTG ...

LLP ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
610512 93

CTG ...

LAH ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
614708 270

ATG ...

MLV ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    CDS
    sORF
3T3, E14, MEF,
NSC, v6-5
613731 288

CTG ...

LAS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5