Transcript 503928

Transcript

ID CARD

MetamORF ID

503928

ENSMUST00000161482

Name

Prpf3-208

Strand

Biotype

processed_transcript

Start-end positions

95836489-95845167

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:70767

Aliases

3632413F13Rik,
ENSMUSG00000015748, MGI:1918017, NCBI:70767,
OFF:Prpf3, Prpf3

Chr 3

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1222177	45	AGG ...	RAN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1374109	108	TTG ...	LTP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
819901	252	GTG ...	VDA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, v6-5
140452	33	GTG ...	VGL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	MEF
1221132	48	ATT ...	IEW ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
136723	36	GTG ...	VVG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF
750486	54	TTG ...	LSG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF
1219663	33	ATC ...	ILQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
505898	36	TTG ...	LRK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Spleen_B_cell
503927	165	TTG ...	LEK ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1222112	132	AAG ...	KTW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
818111	156	CTG ...	LQA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, v6-5
539505	60	CTG ...	LRL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, v6-5
1219408	147	AAG ...	KPS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
818800	204	CTG ...	LKA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, v6-5
1221514	69	AAG ...	KEG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1221877	66	ATA ...	ISL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1218227	165	AAG ...	KQQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
504275	51	ATG ...	MTR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
506089	183	GTG ...	VKR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Spleen_B_cell, v6-5
1217983	48	ATC ...	IQP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14

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