Transcript 503561

Transcript

ID CARD

MetamORF ID

503561

ENSMUST00000184113

Name

Ect2-212

Strand

Biotype

nonsense_mediated_decay

Start-end positions

27097226-27153850

CDS Start-stop positions

27145004-27150158

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:13605

Aliases

AI528536,
Ect2, ENSMUSG00000027699, MGI:95281,
NCBI:13605, OFF:Ect2

Chr 3

ORFs

87 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1170805	126	TTG ...	LCP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
540637	162	TTG ...	LFW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	3T3
1729283	30	ATG ...	MKR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
1174031	75	ATG ...	MTY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
1173615	99	CTG ...	LPA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
504115	111	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, MEF, Spleen_B_cell
1172775	105	TTG ...	LPF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
1219428	126	AAG ...	KRA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1220038	48	AAG ...	KHS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1170865	42	ATG ...	MRA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1173234	60	CTG ...	LIV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
748868	75	GTG ...	VGL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
1219172	168	AAG ...	KRP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
749816	72	GTG ...	VDD ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, MEF
1218755	75	AAG ...	KES ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
507415	30	GTG ...	VPT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell
1221439	30	ATT ...	ICK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1221549	93	AAG ...	KKK ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1171509	60	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
538731	42	ATG ...	MKG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain
1218104	78	AAG ...	KHT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1217980	153	AGG ...	RAF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1218351	276	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14
748984	69	CTG ...	LGF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF, v6-5
1218794	69	AAG ...	KFY ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1218125	69	AAG ...	KTI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
503560	66	CTG ...	LGT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
1172500	57	TTG ...	LFL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
1218078	150	AAG ...	KSC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
506677	72	GTG ...	VSL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, MEF, Spleen_B_cell
1220280	93	AGG ...	RWQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
750371	126	GTG ...	VPL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14
1173289	159	TTG ...	LIT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1174425	72	ATG ...	MIL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
1173837	84	TTG ...	LYE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
1219145	243	AAG ...	KRR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1730117	30	ATG ...	MWL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1173946	54	TTG ...	LMT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
1375374	282	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1173530	69	TTG ...	LVS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
1373947	138	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
751463	63	CTG ...	LKM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, MEF
1173148	66	CTG ...	LNL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
1220247	57	AAG ...	KLA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
747305	57	TTG ...	LWN ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, v6-5
537172	60	GTG ...	VVL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, v6-5
1219822	36	ATT ...	IMS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1219521	90	ATT ...	ILA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
751998	78	GTG ...	VVG ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, v6-5
1779097	69	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
1780013	36	GTG ...	VEL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF
750658	126	GTG ...	VLS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Downstream NMD sORF	3T3, E14, MEF, v6-5
1218233	60	AAG ...	KSS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1171884	45	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1170978	81	TTG ...	LFL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
506524	54	CTG ...	LGK ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, MEF, Spleen_B_cell
750492	30	CTG ...	LMK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
1375401	138	TTG ...	LVT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14, MEF
1223138	93	ATC ...	IGV ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
977037	231	TTG ...	LKE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF
1171199	99	CTG ...	LST ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
54431	147	TTG ...	LLV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14
1174152	42	TTG ...	LRP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
538002	54	CTG ...	LCR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF
1780064	66	GTG ...	VLI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
52093	84	GTG ...	VAK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1171621	66	GTG ...	VST ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
1172799	63	GTG ...	VQQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
539108	63	TTG ...	LHL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14
1172383	81	TTG ...	LAH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1172033	84	CTG ...	LYC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
506495	36	ATG ...	MAA ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Spleen_B_cell
1173016	42	GTG ...	VRN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, v6-5
504555	45	CTG ...	LAE ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Downstream NMD sORF	3T3, E14, MEF, Spleen_B_cell
1219127	138	AAG ...	KSS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1172028	66	TTG ...	LKT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
1173754	51	ATG ...	MTL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Downstream NMD sORF	E14, v6-5
1223099	138	AGG ...	RPP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
752141	144	TTG ...	LSQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	3T3
1171706	54	TTG ...	LLT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
751807	57	CTG ...	LRR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
1173518	129	TTG ...	LVH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF, v6-5
537785	33	TTG ...	LHF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF
1172974	135	GTG ...	VTL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF, v6-5
750580	48	TTG ...	LGM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain
1220047	87	AAG ...	KLN ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1221384	153	ATA ...	INQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14

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