Transcript 502642

Transcript

ID CARD

MetamORF ID

502642

ENSMUST00000134890

Name

Tmem154-204

Strand

Biotype

retained_intron

Start-end positions

84666210-84685665

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:320782

Aliases

9930117H01Rik,
ENSMUSG00000056498, MGI:2444725, NCBI:320782,
OFF:Tmem154, Tmem154

Chr 3

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
504935	42	ATG ...	MCA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Spleen_B_cell
1057010	33	TTG ...	LEG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1056900	93	GTG ...	VAI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1056496	147	GTG ...	VNS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
206	90	ATG ...	MTR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
1056380	183	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1057163	174	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
502641	72	CTG ...	LLI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Spleen_B_cell
1056546	111	GTG ...	VEF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1057879	81	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil

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