Transcript 49988 | MetamORF

Transcript

ID CARD

MetamORF ID

49988

ENSMUST00000153683

Name

Psmd14-207

Strand

Biotype

processed_transcript

Start-end positions

61711791-61761380

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:59029

Aliases

2610312C03Rik,
3200001M20Rik, AA986732, ENSMUSG00000026914,
MGI:1913284, NCBI:59029, OFF:Psmd14,
Pad1, Poh1, Psmd14,
rpm11

Chr 2

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1724897	87	TTG ...	LCP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1575622	141	ATA ...	IWT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	MEF
967660	120	TTG ...	LEE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1372171	195	TTG ...	LSV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
50581	288	GTG ...	VDT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, Testis
112253	39	ATG ...	MVV ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, Liver, MEF, R1E
498968	36	TTG ...	LVN ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, Liver, Spleen_B_cell
807992	69	TTG ...	LKF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF
728141	51	CTG ...	LPW ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, Liver, MEF, R1E
46084	33	ATG ...	MCL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF
499349	123	CTG ...	LPE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
46928	36	TTG ...	LMC ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Spleen_B_cell
50150	249	TTG ...	LLK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
1213617	105	CTG ...	LDW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
969354	48	ATT ...	ITV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
739194	33	GTG ...	VNL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
729958	33	GTG ...	VLE ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Liver, MEF, R1E
107954	129	TTG ...	LYL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF
497765	36	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
114473	57	ATG ...	MLL ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, Liver, MEF, R1E
412183	39	TTG ...	LEL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14
728110	30	CTG ...	LEC ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, R1E
49987	255	TTG ...	LAL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
412817	264	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	C2C12
811555	105	CTG ...	LCT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E
1209129	30	ATA ...	ITN ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1211278	135	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14

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