Transcript 49931 | MetamORF

Transcript

ID CARD

MetamORF ID

49931

ENSMUST00000124163

Name

Dnajc24-202

Strand

Biotype

processed_transcript

Start-end positions

105966784-106003263

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:99349

Aliases

1700030A21Rik,
2610027M02Rik, AV066965, AW240712,
Dnajc24, Dph4, ENSMUSG00000027166,
MGI:1919522, MmDjC7, NCBI:99349,
OFF:Dnajc24, Zcsl3

Chr 2

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
412824	96	AAG ...	KDW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
49930	279	TTG ...	LVQ ...	Ribo-seq	TTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5
106394	36	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
122666	204	CTG ...	LPV ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, R1E, Spleen_B_cell
121550	198	GTG ...	VDA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, R1E
50330	114	TTG ...	LEQ ...	Ribo-seq	TTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis
51092	123	CTG ...	LMA ...	Ribo-seq	CTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
501164	162	GTG ...	VRL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Spleen_B_cell
500240	120	GTG ...	VEP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1420726	30	CTG ...	LIV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
111870	57	GTG ...	VGP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
492907	114	CTG ...	LSC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
117635	78	CTG ...	LGA ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E
501590	183	GTG ...	VGP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Spleen_B_cell
412946	246	AGG ...	RGR ...	Ribo-seq	AGG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12, E14
969146	171	GTG ...	VKR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF

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