Transcript 49795 | MetamORF

Transcript

ID CARD

MetamORF ID

49795

ENSMUST00000137377

Name

Tmx4-204

Strand

Biotype

processed_transcript

Start-end positions

134599003-134644132

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:52837

Aliases

2810417D04Rik,
4930500L08Rik, AI843224, AW046784,
D2Bwg1356e, ENSMUSG00000034723, MGI:106558,
mKIAA1162, NCBI:52837, OFF:Tmx4,
Tmx4, Txndc13

Chr 2

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1052525	123	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
47481	72	GTG ...	VQK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1054639	81	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1008518	90	GTG ...	VPL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
49165	63	ATG ...	MGY ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	ncRNA sORF	Brain
1503898	69	TTG ...	LFL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
105331	48	TTG ...	LSG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
105012	54	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1053835	60	GTG ...	VKA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
50352	36	TTG ...	LPH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
104987	42	TTG ...	LSP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
49794	135	CTG ...	LFM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, Testis
51391	123	CTG ...	LIL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, Testis
106346	93	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
51513	144	GTG ...	VFG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, Testis
50422	201	GTG ...	VTL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, Testis
103026	39	TTG ...	LPH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1054537	111	GTG ...	VIS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
102608	123	ATG ...	MLH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
44651	36	ATG ...	MFL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
114446	39	TTG ...	LSL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
45734	30	CTG ...	LCA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
97406	87	CTG ...	LNG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1052631	117	CTG ...	LVV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
50143	147	TTG ...	LVF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, Testis

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