Transcript 49699 | MetamORF

Transcript

ID CARD

MetamORF ID

49699

ENSMUST00000103199

Name

Snrpb-201

Strand

Biotype

protein_coding

Start-end positions

130171635-130179403

CDS Start-stop positions

130171933-130179236

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:20638

Aliases

AL024368,
AU018828, ENSMUSG00000027404, MGI:98342,
NCBI:20638, OFF:Snrpb, SM-B,
SM11, SMB, SNRNP-B,
Snrpb

Chr 2

ORFs

56 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
125325	99	CTG ...	LLA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, R1E, Spleen_B_cell
118379	108	GTG ...	VMS ...	Ribo-seq	GTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, R1E, Spleen_B_cell, v6-5
48859	150	TTG ...	LPE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
50396	192	CTG ...	LSI ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, Testis
50796	144	CTG ...	LAC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Brain, E14, Testis
412959	39	ATC ...	IRR ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, E14
121781	75	GTG ...	VFL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, R1E, Spleen_B_cell
45191	126	CTG ...	LLG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1421246	189	TTG ...	LYV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	CDS sORF	BMDC, Liver
737529	51	GTG ...	VHP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
43891	69	CTG ...	LAT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, MEF
500043	51	GTG ...	VGV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, Spleen_B_cell
49061	96	CTG ...	LAE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
50077	216	ATG ...	MYL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, R1E, Spleen_B_cell, Testis
47550	45	CTG ...	LAC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
122820	78	CTG ...	LVF ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell
50148	126	CTG ...	LLG ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, Testis
50596	51	CTG ...	LWQ ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
102822	45	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
500957	45	TTG ...	LLG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
47019	78	CTG ...	LAE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain
47900	42	CTG ...	LGQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
49698	123	CTG ...	LGG ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, Testis
124649	96	CTG ...	LAE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, R1E, Spleen_B_cell
50256	132	CTG ...	LEL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, Testis
49224	75	GTG ...	VFL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
500403	42	CTG ...	LGQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
45319	132	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
51693	135	TTG ...	LLE ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, Testis
500565	57	CTG ...	LVV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, Spleen_B_cell
51567	201	TTG ...	LKT ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, R1E, Testis
965527	57	AAG ...	KRS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
412752	42	ATC ...	IRR ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, C2C12
500157	120	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, Spleen_B_cell
48128	78	CTG ...	LVF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
49775	246	CTG ...	LRG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
47418	54	CTG ...	LWQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
49905	102	CTG ...	LAE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Testis
99655	54	CTG ...	LQD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
51661	150	TTG ...	LPE ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, Testis
44043	42	TTG ...	LVW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC
50013	66	CTG ...	LAT ...	Ribo-seq	CTG		16	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
45939	120	CTG ...	LAC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain
412216	111	ATT ...	ISV ...	Ribo-seq	ATT		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, C2C12, MEF
976888	108	ATT ...	ISV ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF
51631	156	CTG ...	LAL ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, Testis
47886	99	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
117805	114	GTG ...	VTV ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, R1E, Spleen_B_cell, v6-5
500082	117	TTG ...	LQL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, Spleen_B_cell
125631	105	ATG ...	MSS ...	Ribo-seq	ATG		15	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
46137	135	TTG ...	LLE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
502455	54	CTG ...	LQD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell
46047	156	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
745346	156	CTG ...	LSS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	CDS sORF	3T3, B_cell, BMDC, Liver, R1E
44265	123	CTG ...	LGG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1216669	57	AGG ...	RPL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14

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