Transcript 496044

Transcript

ID CARD

MetamORF ID

496044

ENSMUST00000090447

Name

Nat10-202

Strand

Biotype

retained_intron

Start-end positions

103734339-103743357

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

NCBI:98956

Aliases

AI429152,
ENSMUSG00000027185, MGI:2138939, Nat10,
NCBI:98956, OFF:Nat10

Chr 2

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1639112	60	CTG ...	LYL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1163306	57	GTG ...	VKS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1208519	162	GTG ...	VIR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1640803	45	TTG ...	LNL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1165313	33	CTG ...	LVF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1167210	99	CTG ...	LVV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1208796	90	ATA ...	IDE ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1207548	156	AGG ...	RVN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1166775	114	CTG ...	LGQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
496043	36	ATG ...	MCS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
1366009	153	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1161945	93	GTG ...	VID ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1163147	60	CTG ...	LVK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1165028	48	CTG ...	LLG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1168312	120	GTG ...	VKL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1640328	39	TTG ...	LYL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1213634	69	ATC ...	IYY ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14

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