Transcript 492756

Transcript

ID CARD

MetamORF ID

492756

ENSMUST00000127939

Name

Rnf114-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

167503446-167516164

CDS Start-stop positions

167503459-167510906

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:81018

Aliases

1110008J21Rik,
AI225886, AW549494, ENSMUSG00000006418,
MGI:1933159, NCBI:81018, OFF:Rnf114,
Rnf114, Zfp228, Zfp313,
Znf228

Chr 2

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
499442	129	TTG ...	LLP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
495366	45	CTG ...	LAS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Liver
112825	144	TTG ...	LLC ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
495393	78	CTG ...	LSV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
48391	135	ATG ...	MPA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
1366302	135	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14
812164	144	GTG ...	VCR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
98291	123	ATG ...	MSE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF, Spleen_B_cell
499540	183	CTG ...	LQE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
99685	90	GTG ...	VSQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF, Spleen_B_cell
498802	48	CTG ...	LEV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, E14, Liver, Spleen_B_cell
496452	54	GTG ...	VCL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, E14, Liver, Spleen_B_cell
44898	99	GTG ...	VPR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Spleen_B_cell
492935	30	GTG ...	VLQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, E14, Spleen_B_cell
499094	171	CTG ...	LKP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
811275	108	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
495016	72	GTG ...	VGC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
47825	30	TTG ...	LSL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
493426	33	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
109490	99	CTG ...	LWG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF, Spleen_B_cell
498742	141	ATG ...	MEP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Spleen_B_cell
45420	66	TTG ...	LIR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, MEF
813332	129	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
498215	75	GTG ...	VEH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
49625	129	ATG ...	MFQ ...	Ribo-seq	ATG		1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
43880	63	GTG ...	VPT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, E14, Liver, Spleen_B_cell

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