Transcript 487289

Transcript

ID CARD

MetamORF ID

487289

ENSMUST00000156291

Name

Fen1-204

Strand

Biotype

protein_coding

Start-end positions

10199132-10204169

CDS Start-stop positions

10199936-10201078

CDS Relative positions

427-1569

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:14156

Aliases

AW538437,
ENSMUSG00000024742, FEN-1, Fen1,
MGI:102779, NCBI:14156, OFF:Fen1

Chr 19

ORFs

53 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
487626	48	GTG ...	VGM ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
490002	120	GTG ...	VRS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Spleen_B_cell
489964	84	GTG ...	VLP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell
489462	60	CTG ...	LRE ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E, Spleen_B_cell
488098	66	GTG ...	VPS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
489899	60	CTG ...	LFV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
490724	45	CTG ...	LCY ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E, Spleen_B_cell
487387	57	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	R1E, Spleen_B_cell
488970	54	GTG ...	VVK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
489914	141	TTG ...	LEG ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Spleen_B_cell
489695	36	CTG ...	LCT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, R1E, Spleen_B_cell
490465	51	ATG ...	MTS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
489261	114	TTG ...	LMH ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, R1E, Spleen_B_cell
487797	54	TTG ...	LGH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Spleen_B_cell
488396	114	TTG ...	LWI ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, R1E, Spleen_B_cell
487802	60	TTG ...	LGP ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, R1E, Spleen_B_cell
489317	48	ATG ...	MAS ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, R1E, Spleen_B_cell
490555	108	CTG ...	LCC ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E, Spleen_B_cell
489152	51	CTG ...	LRP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell
488455	81	CTG ...	LPW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell
720383	45	CTG ...	LPV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
488115	51	GTG ...	VKS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
490705	111	ATG ...	MHP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell
489147	81	ATG ...	MKK ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
489868	90	CTG ...	LAP ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell
490022	33	TTG ...	LVA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
1159241	42	GTG ...	VQT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
489335	63	TTG ...	LLF ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
488295	66	GTG ...	VAL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, R1E, Spleen_B_cell
406562	30	GTG ...	VDS ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Spleen_B_cell
487432	57	GTG ...	VRM ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
720889	39	GTG ...	VRP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
489359	66	CTG ...	LKE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E, Spleen_B_cell
720827	42	GTG ...	VHS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
489197	66	CTG ...	LAK ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell
489486	84	TTG ...	LLM ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
805381	171	CTG ...	LAD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
487288	78	ATG ...	MWP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
719089	51	CTG ...	LPH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
42077	51	TTG ...	LLL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, R1E, Spleen_B_cell
487596	45	CTG ...	LWI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E, Spleen_B_cell
491811	90	CTG ...	LLR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, R1E, Spleen_B_cell
406173	36	GTG ...	VLP ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, R1E, Spleen_B_cell
489552	81	CTG ...	LMW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
488607	159	GTG ...	VTR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
488064	75	CTG ...	LRS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
976474	33	CTG ...	LLK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	MEF
490766	54	ATG ...	MLR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell
488358	78	CTG ...	LGT ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, MEF, R1E, Spleen_B_cell
489534	36	CTG ...	LKS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
488568	93	GTG ...	VRG ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E, Spleen_B_cell
488420	93	CTG ...	LSR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Spleen_B_cell
488232	87	CTG ...	LKA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, Spleen_B_cell

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