Transcript 478564

Transcript

ID CARD

MetamORF ID

478564

ENSMUST00000114385

Name

Hnrnpm-202

Strand

Biotype

protein_coding

Start-end positions

33646235-33685392

CDS Start-stop positions

33646732-33685379

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:76936

Aliases

2610023M21Rik,
AA409009, ENSMUSG00000059208, Hnrnpm,
Hnrpm, MGI:1926465, mKIAA4193,
NCBI:76936, OFF:Hnrnpm

Chr 17

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
482071	45	CTG ...	LSG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream sORF	Liver, MEF, Neutrophil
386530	30	TTG ...	LID ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1048338	60	CTG ...	LVW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
479593	72	ATG ...	MRG ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil, R1E, Spleen_B_cell
1677976	114	CTG ...	LCQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
35956	57	GTG ...	VWW ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
481651	156	CTG ...	LYA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream sORF	Liver, Neutrophil, R1E
381173	45	ATG ...	MAS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E, Spleen_B_cell
1628311	36	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1678364	63	CTG ...	LVC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
795677	33	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
478563	108	GTG ...	VVK ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative Downstream sORF	Liver, MEF, Neutrophil, R1E, Spleen_B_cell
1677607	42	ATG ...	MHY ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
385619	30	ATG ...	MED ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
795966	36	CTG ...	LNA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
797265	30	TTG ...	LLN ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
36221	48	GTG ...	VKN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, R1E
480306	84	GTG ...	VAE ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative Downstream sORF	Liver, MEF, Neutrophil, R1E
482532	159	GTG ...	VLY ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Downstream sORF	Liver, Neutrophil, R1E

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