Transcript 47696 | MetamORF

Transcript

ID CARD

MetamORF ID

47696

ENSMUST00000088494

Name

Blcap-201

Strand

Biotype

protein_coding

Start-end positions

157556362-157566361

CDS Start-stop positions

157557890-157558153

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:53619

Aliases

AI462828,
Bc10, Blcap, ENSMUSG00000067787,
MGI:1858907, NCBI:53619, OFF:Blcap

Chr 2

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1010003	264	ATG ...	MYC ...	Predicted Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Mackowiak2015	CDS sORF	E14
120371	75	ATG ...	MVG ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, E14
116474	51	TTG ...	LFP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
111982	90	CTG ...	LTA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
120486	78	GTG ...	VAA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain
1217640	147	AGG ...	RYR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	E14
96769	30	GTG ...	VFC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
120240	120	GTG ...	VEA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14
48770	63	CTG ...	LLG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
116279	36	CTG ...	LLR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
121323	144	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
1550809	69	GTG ...	VPW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
98827	48	ATG ...	MVG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
120036	72	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
971398	111	AGG ...	RWR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
971507	105	AGG ...	RQA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
122489	126	CTG ...	LGR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	Brain
47695	60	CTG ...	LGK ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis

Export data