Transcript 474423

Transcript

ID CARD

MetamORF ID

474423

ENSMUST00000129171

Name

Mis18a-202

Strand

Biotype

retained_intron

Start-end positions

90719312-90727404

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:66578

Aliases

2610039C10Rik,
2810018N07Rik, ENSMUSG00000022978, MGI:1913828,
Mis18a, NCBI:66578, OFF:Mis18a

Chr 16

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
476765	54	CTG ...	LDY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
371194	54	GTG ...	VGK ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, Spleen_B_cell
475046	78	GTG ...	VYR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, R1E
371983	42	CTG ...	LLP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
33496	48	ATG ...	MAA ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, R1E, Spleen_B_cell
476853	57	CTG ...	LWI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
475315	174	CTG ...	LVS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, Spleen_B_cell
375048	51	CTG ...	LHG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
474565	162	ATG ...	MFL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, Spleen_B_cell
475395	60	CTG ...	LQK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
476798	81	GTG ...	VSE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
474106	33	CTG ...	LSK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, R1E
33288	30	CTG ...	LLP ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, R1E, Spleen_B_cell
474976	36	TTG ...	LFC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, R1E
475788	51	GTG ...	VDK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
475816	147	TTG ...	LWL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
34791	39	ATG ...	MSW ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, MEF, R1E, Spleen_B_cell
475517	114	CTG ...	LYC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, R1E
475303	69	CTG ...	LTA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
371634	30	CTG ...	LGC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell

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