Transcript 469392

Transcript

ID CARD

MetamORF ID

469392

ENSMUST00000134878

Name

Myh9-206

Strand

Biotype

retained_intron

Start-end positions

77805546-77842105

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:17886

Aliases

ENSMUSG00000022443,
Fltn, MGI:107717, Myh9,
Myhn-1, Myhn1, NCBI:17886,
NMHCIIA, NMMHC-A, NMMHC-IIA,
OFF:Myh9, TU72.6

Chr 15

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
470970	90	CTG ...	LPR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
471860	51	CTG ...	LGC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
471505	99	CTG ...	LTG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Spleen_B_cell
421399	132	GTG ...	VWS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
421531	120	CTG ...	LTC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Spleen_B_cell
1452309	54	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
469391	156	CTG ...	LQT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
11617	240	CTG ...	LVE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Spleen_B_cell
470256	30	ATG ...	MGA ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
11751	219	GTG ...	VKV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
11667	264	GTG ...	VGE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Spleen_B_cell
470143	138	ATG ...	MWI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
421571	279	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
470095	48	TTG ...	LNQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
11722	72	GTG ...	VPQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Spleen_B_cell
11834	213	GTG ...	VNK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
469817	228	CTG ...	LSH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
363464	57	CTG ...	LAA ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
471692	54	ATG ...	MAL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell

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