Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

468

ID

ENSMUST00000068301

Name

Cept1-202

Strand

-

Biotype

protein_coding

Start-end positions

106502260-106547802

CDS Start-stop positions

106503625-106539528

CDS Relative positions

-

Sequences

Transcript sequence

TTT ...

Gene

ID

NCBI:99712

Aliases

9930118K05Rik,
Cept1, ENSMUSG00000040774, mCEPT1,
MGI:2139793, NCBI:99712, OFF:Cept1


Chr 3

ORFs

81 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

747937 33

TTG ...

LYC ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
131490 78

TTG ...

LLG ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
143254 132

TTG ...

LEL ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF
893155 39

ATT ...

ILT ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
129585 126

TTG ...

LQY ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain
894076 105

AGG ...

RPE ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1374903 30

TTG ...

LKS ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
135242 42

GTG ...

VLV ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain
138329 93

TTG ...

LLF ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
542130 285

ATG ...

MEV ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    CDS
    sORF
3T3, E14, Neutrophil,
R1E, v6-5
143757 225

ATG ...

MGN ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, v6-5
1174240 39

ATG ...

MSL ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
537992 33

GTG ...

VKC ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
540842 51

TTG ...

LVL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
126951 69

CTG ...

LCL ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
972294 87

AAG ...

KCP ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
544103 45

TTG ...

LCR ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
136067 60

TTG ...

LEE ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain
136022 147

TTG ...

LWF ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain
139414 69

ATG ...

MSS ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
Brain
895005 66

ATC ...

IGQ ...

Ribo-seq
ATC strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
144600 174

TTG ...

LIM ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
v6-5
130869 48

TTG ...

LPV ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain
135716 36

ATG ...

MFL ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain
972523 156

AAG ...

KST ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
819377 51

CTG ...

LPP ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
894194 111

AGG ...

RDH ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
133286 105

CTG ...

LDV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
136553 57

CTG ...

LHF ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
895306 216

AGG ...

RPE ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
129397 102

CTG ...

LTG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
144954 120

TTG ...

LQY ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF
144017 141

TTG ...

LWF ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
v6-5
537858 60

CTG ...

LCQ ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
143354 96

CTG ...

LTG ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, v6-5
972504 42

TTG ...

LVL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
143051 72

TTG ...

LLG ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
v6-5
538063 36

GTG ...

VAF ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
127494 63

TTG ...

LCT ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
127346 54

GTG ...

VHT ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain
894850 105

GTG ...

VFA ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
127799 138

TTG ...

LEL ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain
133717 72

GTG ...

VGI ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
972224 57

ATC ...

ISD ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
135090 45

GTG ...

VEI ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1171275 36

GTG ...

VSF ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, v6-5
893191 33

ATC ...

ISP ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
143877 69

CTG ...

LGH ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
v6-5
132910 39

TTG ...

LPQ ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
142644 30

ATG ...

MFL ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
R1E, v6-5
17029 33

TTG ...

LED ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Skin_tumor,
v6-5
132648 75

CTG ...

LGH ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
132620 84

GTG ...

VGL ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
817232 54

GTG ...

VLP ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
142203 108

TTG ...

LGQ ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF
141702 48

GTG ...

VHT ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, Neutrophil,
v6-5
893754 75

ATA ...

IYM ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
819274 60

GTG ...

VNV ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
128953 114

ATG ...

MGN ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
142669 168

ATG ...

MAV ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
v6-5
134193 30

GTG ...

VLD ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain
413385 51

CTG ...

LES ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC
752187 30

GTG ...

VVL ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
544136 114

TTG ...

LLF ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC
538330 48

TTG ...

LQS ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
v6-5
750386 39

TTG ...

LLF ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC
544258 267

TTG ...

LIL ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    CDS
    sORF
3T3, E14, Neutrophil,
NSC, R1E, v6-5
141259 162

GTG ...

VTH ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
v6-5
1175591 150

CTG ...

LQF ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF, v6-5
893645 168

ATG ...

MAS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
139760 90

TTG ...

LFC ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
542527 126

CTG ...

LES ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC
134112 63

TTG ...

LWP ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain
140699 90

TTG ...

LHL ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
Brain
541883 279

GTG ...

VPS ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    CDS
    sORF
3T3, E14, Neutrophil,
R1E
137884 114

TTG ...

LGQ ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
138291 54

CTG ...

LAN ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
142897 261

TTG ...

LFY ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    CDS
    sORF
3T3, E14, Neutrophil,
NSC, R1E, v6-5
467 30

TTG ...

LED ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
Skin_tumor, v6-5
134053 72

ATG ...

MWR ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
538133 45

CTG ...

LWQ ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5