Transcript 465916

Transcript

ID CARD

MetamORF ID

465916

ENSMUST00000168575

Name

Pspc1-204

Strand

Biotype

nonsense_mediated_decay

Start-end positions

56748858-56777927

CDS Start-stop positions

56764203-

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:66645

Aliases

5730470C09Rik,
AI327109, AI449052, ENSMUSG00000021938,
MGI:1913895, NCBI:66645, OFF:Pspc1,
PSP1, Pspc1

Chr 14

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
466727	48	CTG ...	LHE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1139563	57	ATG ...	MLI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	v6-5
29819	135	TTG ...	LNM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
29162	72	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
465915	114	GTG ...	VDD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
28732	150	CTG ...	LGH ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	NMD sORF	MEF
468067	33	CTG ...	LQK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	B_cell, Spleen_B_cell
465960	294	CTG ...	LAE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
29895	129	ATG ...	MRL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
946009	78	ACG ...	TFG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	NMD sORF	BMDC
466857	120	GTG ...	VVV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
1138682	255	CTG ...	LKS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	NSC, v6-5
467878	270	TTG ...	LDG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
29416	159	TTG ...	LLN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
1139019	207	TTG ...	LYV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1140243	36	ATG ...	MIV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	v6-5
28929	141	TTG ...	LNL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	NMD sORF	MEF
466834	57	TTG ...	LEE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	B_cell, Spleen_B_cell
468132	63	TTG ...	LQR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Spleen_B_cell
786563	87	CTG ...	LEA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, NSC, v6-5

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