Transcript 46376 | MetamORF

Transcript

ID CARD

MetamORF ID

46376

ENSMUST00000154841

Name

Eif6-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

155820033-155826436

CDS Start-stop positions

155823296-155826433

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:16418

Aliases

1110004P11,
AA408895, CAB, eIF-6,
Eif6, ENSMUSG00000027613, imc-415,
Itgb4bp, MGI:1196288, NCBI:16418,
OFF:Eif6, p27(BBP), p27BBP

Chr 2

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
46288	57	ATG ...	MSP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
49441	84	GTG ...	VVE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, R1E, Testis
49395	81	GTG ...	VES ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E, Testis
95413	75	TTG ...	LVC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
47559	138	GTG ...	VND ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, R1E, Testis
45496	90	CTG ...	LVH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
44336	165	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain
46375	159	GTG ...	VIA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, R1E, Testis
47232	90	CTG ...	LSV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, R1E, Testis
111224	171	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
44454	36	ATG ...	MWP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF
49206	111	CTG ...	LDT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, R1E, Testis
14875	39	CTG ...	LVA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver
15706	36	GTG ...	VAI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver
44826	42	ATG ...	MTM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF
49434	201	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
47782	177	GTG ...	VNR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, R1E, Testis
46983	63	TTG ...	LAM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
45675	102	GTG ...	VHA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
48901	141	GTG ...	VVN ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, R1E, Testis

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