Transcript 46066 | MetamORF

Transcript

ID CARD

MetamORF ID

46066

ENSMUST00000138889

Name

Ntmt1-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

30807941-30823017

CDS Start-stop positions

30819671-30820563

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:66617

Aliases

2610205E22Rik,
AL033331, AL033332, ENSMUSG00000026857,
Mettl11a, MGI:1913867, NCBI:66617,
NTM1A, Ntmt1, OFF:Ntmt1

Chr 2

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
97517	132	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative CDS NMD sORF	Brain
1167006	33	ATG ...	MRS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
493555	30	CTG ...	LAT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Spleen_B_cell
97868	186	CTG ...	LCL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD Overlapping sORF	Brain
102398	87	GTG ...	VPW ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative CDS NMD sORF	Brain
97195	45	CTG ...	LPD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
46556	126	GTG ...	VCR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
734215	69	CTG ...	LVL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative CDS NMD sORF	Brain
492904	108	CTG ...	LQA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
48518	252	CTG ...	LTD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
104501	45	GTG ...	VGC ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell
46116	138	GTG ...	VDS ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell, Testis
96462	126	CTG ...	LCF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative CDS NMD sORF	Brain
731875	45	ATG ...	MAS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
103918	174	CTG ...	LWR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD Overlapping sORF	Brain
109365	75	GTG ...	VAL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative CDS NMD sORF	Brain
46065	147	CTG ...	LDD ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell, Testis
48030	108	GTG ...	VVR ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
47531	237	CTG ...	LAE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, Spleen_B_cell, Testis
48329	204	CTG ...	LRP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell, Testis
48698	225	CTG ...	LRR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, Spleen_B_cell, Testis
48953	153	GTG ...	VIL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell, Testis
103384	69	CTG ...	LAE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell
97739	63	TTG ...	LEG ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative CDS NMD sORF	Brain
95255	30	CTG ...	LLW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	Brain

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