Transcript 46045 | MetamORF

Transcript

ID CARD

MetamORF ID

46045

ENSMUST00000189051

Name

Sf3b1-206

Strand

Biotype

processed_transcript

Start-end positions

55015801-55027373

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:81898

Aliases

155kDa,
2810001M05Rik, AA409119, ENSMUSG00000025982,
MGI:1932339, NCBI:81898, OFF:Sf3b1,
Prp10, SAP155, Sf3b1,
SF3b155, TA-8, Targ4

Chr 1

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
425323	135	GTG ...	VTF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell
360386	60	CTG ...	LDI ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell, v6-5
371745	51	ATG ...	MPP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell, v6-5
384296	30	ATG ...	MIY ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell
46044	174	GTG ...	VAL ...	Ribo-seq	GTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
368508	51	ATG ...	MTK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell
800551	165	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
19233	165	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
10707	30	ATG ...	MNT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, v6-5
94948	66	CTG ...	LSI ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell, v6-5
28839	108	ATG ...	MTM ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell, v6-5
379665	102	ATG ...	MRC ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell, v6-5
49337	210	TTG ...	LLG ...	Ribo-seq	TTG		17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
53377	168	TTG ...	LLN ...	Ribo-seq	TTG		17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
34149	90	ATG ...	MKP ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell
968246	102	ATT ...	IAD ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
41552	93	TTG ...	LMK ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Spleen_B_cell
292484	78	ATG ...	MIH ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell, v6-5
450210	69	TTG ...	LIP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell
24763	33	GTG ...	VEV ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell
355582	36	ATG ...	MVE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell
1227724	105	AAG ...	KIA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
16087	45	TTG ...	LPI ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell, v6-5
453663	123	GTG ...	VFD ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell, v6-5
359237	69	TTG ...	LLS ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell, v6-5
38318	102	ATG ...	MTT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell, v6-5
403170	114	GTG ...	VGI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell

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