Transcript 458513

Transcript

ID CARD

MetamORF ID

458513

ENSMUST00000170958

Name

Gm20498-205

Strand

Biotype

processed_transcript

Start-end positions

81474595-81532761

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAT ...

Genome browsers

UCSC

Gene

NCBI:105940408

Aliases

Arip2,
ARIP2a, ENSMUSG00000021139, Gm20498,
MGI:5141963, NCBI:105940408, OFF:Gm20498,
Omp25, Synj2bp, Synj2bp-cox16

Chr 12

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
25376	114	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
419988	102	ATG ...	MSP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
322649	54	TTG ...	LEV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
324098	42	TTG ...	LVF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
460462	87	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
323347	69	TTG ...	LRP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
459085	69	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Liver
25356	90	GTG ...	VDL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Liver
322785	57	TTG ...	LLE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
460723	168	TTG ...	LFL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
1299283	78	AAG ...	KPA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
326697	105	TTG ...	LLV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
459801	57	ATG ...	MGL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
420082	120	GTG ...	VGQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
327571	60	CTG ...	LCC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Liver
1298898	30	ATA ...	ITL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
324474	33	GTG ...	VNF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
25176	102	CTG ...	LVV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
24870	84	CTG ...	LAP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Liver
459396	51	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
460352	51	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
458512	39	ATG ...	MGG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell

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