Transcript 45721 | MetamORF

Transcript

ID CARD

MetamORF ID

45721

ENSMUST00000140776

Name

Fastkd1-204

Strand

Biotype

retained_intron

Start-end positions

69705085-69713498

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:320720

Aliases

5330408N05Rik,
ENSMUSG00000027086, Fastkd1, MGI:2444596,
mKIAA1800, NCBI:320720, OFF:Fastkd1

Chr 2

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
106619	42	ATG ...	MRH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1871982	213	GTG ...	VFI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
499542	42	GTG ...	VAQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1872254	180	GTG ...	VGC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1876479	228	GTG ...	VFD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1873457	129	TTG ...	LEK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
810704	75	CTG ...	LLW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
1162022	114	CTG ...	LPG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
103857	72	CTG ...	LCD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
116738	78	ATG ...	MGL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
1872913	270	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
110537	54	TTG ...	LGY ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
1876234	156	CTG ...	LYQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1876780	93	CTG ...	LSE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
1876773	234	CTG ...	LLE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1873935	96	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
45720	87	CTG ...	LWT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
807556	69	CTG ...	LGP ...	Ribo-seq	CTG	optimal	1	sORFs_org_Mouse	Intronic sORF	B_cell
1875090	183	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E

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