Transcript 45610 | MetamORF

Transcript

ID CARD

MetamORF ID

45610

ENSMUST00000155539

Name

Rrbp1-208

Strand

Biotype

processed_transcript

Start-end positions

143956383-143957645

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:81910

Aliases

1700087N07Rik,
5730465C04Rik, ENSMUSG00000027422, ES/130,
MGI:1932395, mKIAA1398, mRRp0,
mRRp1.8, mRRp10, mRRp15a,
mRRp15b, mRRp16.8, mRRp2,
mRRp41, mRRp47, mRRp5.4,
NCBI:81910, OFF:Rrbp1, p180,
Rrbp1

Chr 2

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
14812	48	GTG ...	VSS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, MEF, Neutrophil, v6-5
45609	126	GTG ...	VSC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, Neutrophil, Testis
964086	36	AGG ...	RLW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1055924	276	CTG ...	LEK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil
1054594	117	CTG ...	LEK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
736605	36	CTG ...	LSG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF
964136	90	AGG ...	RSW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
45839	138	CTG ...	LES ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, Neutrophil, Testis
970149	270	AAG ...	KET ...	Ribo-seq	AAG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
970397	285	GTG ...	VSC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Neutrophil
966844	111	AAG ...	KET ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1501422	60	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
964328	93	AAG ...	KEA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
496025	33	CTG ...	LEG ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	BMDC, NSC, Spleen_B_cell
971843	252	AAG ...	KEA ...	Ribo-seq	AAG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
970391	225	AAG ...	KNN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
971419	231	AAG ...	KGK ...	Ribo-seq	AAG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
971258	297	CTG ...	LES ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Neutrophil

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