Transcript 453205

Transcript

ID CARD

MetamORF ID

453205

ENSMUST00000139387

Name

Prdx6-204

Strand

Biotype

processed_transcript

Start-end positions

161241808-161250554

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:11758

Aliases

1-Cys Prx,
1-cysPrx, 9430088D19Rik, AA690119,
aiPLA2, Aop2, Brp-12,
CP-3, ENSMUSG00000026701, GPx,
Ltw-4, Ltw4, Lvtw-4,
MGI:894320, NCBI:11758, NSGPx,
OFF:Prdx6, ORF06, Prdx5,
Prdx6

Chr 1

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
991939	111	TTG ...	LQM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
54593	90	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
11716	81	TTG ...	LGM ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
12479	129	ATG ...	MLT ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, Neutrophil, Spleen_B_cell
15470	60	TTG ...	LPS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Neutrophil, NSC, Spleen_B_cell
14568	117	GTG ...	VKH ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, Neutrophil, Spleen_B_cell
90771	57	TTG ...	LIA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	E14, Liver, Neutrophil, NSC
890555	42	GTG ...	VLY ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil
7713	195	ATG ...	MQR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	Liver, Neutrophil, NSC
11061	120	ATG ...	MVK ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, Neutrophil, Spleen_B_cell
13174	72	TTG ...	LDP ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
8797	78	ATG ...	MIR ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, Neutrophil, Spleen_B_cell
26013	129	TTG ...	LPF ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
15143	81	TTG ...	LMI ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, Neutrophil, Spleen_B_cell

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