Transcript 451593

Transcript

ID CARD

MetamORF ID

451593

ENSMUST00000041403

Name

Becn1-201

Strand

Biotype

nonsense_mediated_decay

Start-end positions

101288262-101302286

CDS Start-stop positions

101296194-101301854

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:56208

Aliases

Atg6,
Becn1, ENSMUSG00000035086, MGI:1891828,
NCBI:56208, OFF:Becn1

Chr 11

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
934550	171	AAG ...	KAS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
311775	54	CTG ...	LDK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
18910	60	ATG ...	MGT ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
20394	51	CTG ...	LEV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
299923	39	TTG ...	LFP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
1292998	36	AGG ...	RGL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1598158	33	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
447500	162	GTG ...	VEK ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Liver, v6-5
296975	51	CTG ...	LDT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, Neutrophil
1036364	57	CTG ...	LTN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
300060	99	GTG ...	VDH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
309804	75	GTG ...	VRY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1598577	30	CTG ...	LFG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
17469	111	CTG ...	LGG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain, Spleen_B_cell
306804	129	CTG ...	LFD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1600123	51	ATG ...	MHR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1601897	39	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
298982	87	CTG ...	LCE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF
21493	117	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain

Export data