Metam
ORF

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Transcript

ID CARD

MetamORF ID

448884

ID

ENSMUST00000063232

Name

Ewsr1-201

Strand

-

Biotype

protein_coding

Start-end positions

5090459-5099096

CDS Start-stop positions

5091362-5099021

CDS Relative positions

-

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

ID

NCBI:14030

Aliases

ENSMUSG00000009079,
Ews, Ewsh, Ewsr1,
MGI:99960, NCBI:14030, OFF:Ewsr1


Chr 11

ORFs

20 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1530872 135

CTG ...

LMS ...

Ribo-seq
 CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 Brain, MEF
455050 99

ATG ...

MDS ...

Ribo-seq
 ATG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 B_cell, Brain, MEF,
Spleen_B_cell
91042 45

TTG ...

LRE ...

Ribo-seq
 TTG 4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
 Brain, MEF, Spleen_B_cell
1528500 132

ATG ...

MSA ...

Ribo-seq
 ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 Brain
456456 84

ATG ...

MSA ...

Ribo-seq
 ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 B_cell, Brain, MEF,
Neutrophil, Spleen_B_cell
775795 159

ATG ...

MKL ...

Ribo-seq
 ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 B_cell, Brain, MEF
1529589 147

ATG ...

MDS ...

Ribo-seq
 ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 Brain, MEF
1528791 156

ATG ...

MEP ...

Ribo-seq
 ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 Brain, MEF
1697387 39

CTG ...

LHM ...

Ribo-seq
 CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 MEF
1696889 33

ATG ...

MQL ...

Ribo-seq
 ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 MEF
1598417 90

CTG ...

LRS ...

Ribo-seq
 CTG 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
 MEF
1532529 183

TTG ...

LAK ...

Ribo-seq
 TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 Brain, MEF
455109 123

ATG ...

MGN ...

Ribo-seq
 ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 B_cell, Brain, MEF,
Neutrophil, Spleen_B_cell
1530863 171

ATG ...

MGN ...

Ribo-seq
 ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 Brain, MEF
456573 87

CTG ...

LMS ...

Ribo-seq
 CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 B_cell, Brain, MEF,
Neutrophil, Spleen_B_cell
454582 57

CTG ...

LPP ...

Ribo-seq
 CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 B_cell, Brain, MEF,
Spleen_B_cell
937650 75

ATA ...

ILR ...

Ribo-seq
 ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 BMDC
778160 174

GTG ...

VLT ...

Ribo-seq
 GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 B_cell, MEF
1576134 264

ACG ...

TDV ...

Ribo-seq
 ACG 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
 MEF
456685 108

ATG ...

MEP ...

Ribo-seq
 ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
 B_cell, Brain, MEF,
Neutrophil, Spleen_B_cell

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5