Transcript 446216

Transcript

ID CARD

MetamORF ID

446216

ENSMUST00000178665

Name

Zfp207-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

80383279-80405733

CDS Start-stop positions

80383455-80395550

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:22680

Aliases

8430401D15Rik,
BuGZ, ENSMUSG00000017421, MGI:1340045,
NCBI:22680, OFF:Zfp207, Zep,
Zfp207, Znf207

Chr 11

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
447906	162	CTG ...	LMG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF Upstream	Spleen_B_cell
446538	138	ATG ...	MMM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
448080	36	TTG ...	LVI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
452175	84	CTG ...	LAL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
20473	120	ATG ...	MVV ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
453910	135	ATG ...	MMM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
18214	117	GTG ...	VVI ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
449074	132	ATG ...	MMN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
451004	123	TTG ...	LCL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	Spleen_B_cell
18701	45	TTG ...	LIH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
419068	93	TTG ...	LMM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
447457	123	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
450775	135	GTG ...	VSA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	Spleen_B_cell
19071	51	TTG ...	LHH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Spleen_B_cell
446632	54	CTG ...	LLH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Spleen_B_cell
452351	144	ATG ...	MNM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
451349	123	TTG ...	LYI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
452625	93	CTG ...	LFN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
297813	39	ATG ...	MQY ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Spleen_B_cell
19624	48	CTG ...	LMP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
450552	147	CTG ...	LMN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
20954	69	TTG ...	LMP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
310659	90	ATG ...	MMR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
452109	87	ATG ...	MRR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
20512	66	ATG ...	MDR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
91233	30	GTG ...	VGL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
448145	153	ATG ...	MIL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
448173	75	CTG ...	LHQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
20526	81	GTG ...	VPP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	CDS NMD sORF	Spleen_B_cell
450974	117	CTG ...	LFP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF Upstream	Spleen_B_cell
21653	147	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF
448785	159	ATG ...	MGG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	Spleen_B_cell
453784	192	GTG ...	VFF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Spleen_B_cell
446558	195	GTG ...	VVF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Spleen_B_cell
21362	108	CTG ...	LFQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
446215	129	ATG ...	MNL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell

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