Transcript 44380 | MetamORF

Transcript

ID CARD

MetamORF ID

44380

ENSMUST00000138231

Name

Clp1-202

Strand

Biotype

processed_transcript

Start-end positions

84723124-84727276

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:98985

Aliases

AI462438,
Clp1, ENSMUSG00000027079, Heab,
MGI:2138968, NCBI:98985, OFF:Clp1

Chr 2

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
45736	105	GTG ...	VEE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
501580	42	CTG ...	LVL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Spleen_B_cell
494449	84	CTG ...	LMW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
412616	30	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	C2C12, Spleen_B_cell
496143	42	TTG ...	LFE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
497818	117	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
493954	33	CTG ...	LCC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
106697	33	ATG ...	MTR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
47248	99	GTG ...	VEH ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Testis
46495	228	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
47240	177	GTG ...	VST ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
496324	66	CTG ...	LCV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
44379	195	GTG ...	VHH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
45092	105	GTG ...	VDV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Testis
116853	36	ATG ...	MMT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
740311	66	CTG ...	LFT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
732084	30	CTG ...	LVE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
46729	276	GTG ...	VMV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
494143	81	ATG ...	MWA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
501126	48	GTG ...	VKL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
45314	87	GTG ...	VFT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
496345	81	ATG ...	MNV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
48532	54	TTG ...	LPK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
48589	210	GTG ...	VRL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
47201	237	GTG ...	VCR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
45194	204	TTG ...	LGR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
737564	42	TTG ...	LLR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
48064	183	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
49495	222	GTG ...	VPV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
46194	258	CTG ...	LGM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
45328	132	GTG ...	VAG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Testis
47430	183	CTG ...	LSV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
494629	36	GTG ...	VKL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
736989	33	CTG ...	LAW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
48998	114	GTG ...	VTS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
48742	75	CTG ...	LSP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
48452	129	CTG ...	LYI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
44846	252	GTG ...	VGK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis

Export data