Transcript 44263 | MetamORF

Transcript

ID CARD

MetamORF ID

44263

ENSMUST00000142892

Name

Sys1-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

164461053-164479638

CDS Start-stop positions

164461368-164472138

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:66460

Aliases

2610042O14Rik,
AI266964, C87389, ENSMUSG00000045503,
MGI:1913710, NCBI:66460, OFF:Sys1,
Sys1

Chr 2

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
93659	180	TTG ...	LLI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
49040	228	CTG ...	LYF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E, Spleen_B_cell, Testis
47873	180	GTG ...	VHF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E, Spleen_B_cell, Testis
44262	162	CTG ...	LGC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E, Spleen_B_cell, Testis
48200	69	CTG ...	LGF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, R1E, Testis
97314	192	GTG ...	VWD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
112827	87	ATG ...	MAL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Spleen_B_cell
101971	102	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
112349	171	CTG ...	LSQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
44317	99	GTG ...	VCI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E, Spleen_B_cell, Testis
48192	231	TTG ...	LLY ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E, Spleen_B_cell, Testis
47382	63	CTG ...	LCM ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E, Spleen_B_cell, Testis
48587	111	CTG ...	LVQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E, Spleen_B_cell, Testis
110992	48	GTG ...	VHA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Spleen_B_cell
96588	105	CTG ...	LVA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
48134	237	CTG ...	LGL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E, Spleen_B_cell, Testis
48775	123	CTG ...	LTW ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E, Spleen_B_cell, Testis
45213	198	CTG ...	LDF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E, Spleen_B_cell, Testis
106739	84	GTG ...	VHC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
498824	75	CTG ...	LCQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC, Spleen_B_cell
46160	69	GTG ...	VSG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	NMD sORF Upstream	E14, Neutrophil, Spleen_B_cell, Testis

Export data