Metam
ORF

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Transcript

ID CARD

MetamORF ID

441

ID

ENSMUST00000029297

Name

Slc7a11-201

Strand

-

Biotype

protein_coding

Start-end positions

50364938-50443611

CDS Start-stop positions

50372302-50443261

CDS Relative positions

-

Sequences

Transcript sequence

ATA ...

Gene

ID

NCBI:26570

Aliases

9930009M05Rik,
AI451155, ENSMUSG00000027737, MGI:1347355,
NCBI:26570, OFF:Slc7a11, Slc7a11,
sut, xCT


Chr 3

ORFs

44 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

135023 45

ATG ...

MST ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
440 45

GTG ...

VEY ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Skin_tumor
1464262 75

GTG ...

VVC ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
139198 87

CTG ...

LQL ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
895653 63

CTG ...

LSP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1464451 39

CTG ...

LAG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
895986 57

ATG ...

MGC ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC
16907 42

ATG ...

MGQ ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Skin_tumor
1463161 126

TTG ...

LSC ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC
134078 81

CTG ...

LVV ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
972458 72

GTG ...

VTL ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC
1463661 42

GTG ...

VCN ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
142759 228

TTG ...

LCL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1464112 60

TTG ...

LSS ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
894792 48

TTG ...

LFF ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
1462897 30

TTG ...

LLP ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
17139 30

TTG ...

LFE ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1463265 30

CTG ...

LSG ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1463476 48

TTG ...

LQS ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1464526 267

GTG ...

VYS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
894006 42

GTG ...

VRR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
972808 36

GTG ...

VSA ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
16944 69

TTG ...

LDA ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
896085 39

GTG ...

VRR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
895898 42

ATG ...

MLA ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1464414 237

ATG ...

MSI ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
144588 78

CTG ...

LGS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
128467 36

CTG ...

LVC ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
895747 48

ATG ...

MHM ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
137619 147

CTG ...

LPL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
133256 78

GTG ...

VVI ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
972408 66

CTG ...

LPW ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC
1463943 30

ATG ...

MHF ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC
1462915 45

CTG ...

LVC ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
972466 102

CTG ...

LFS ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC
895829 72

GTG ...

VCS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1464588 51

CTG ...

LPV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1463127 90

CTG ...

LEC ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
972427 141

TTG ...

LFC ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC
1463095 45

TTG ...

LWP ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
895755 51

ATG ...

MST ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC
140361 108

ATG ...

MIG ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    sORF
    Upstream
BMDC, Glioma, Liver,
MEF, MESC
893537 57

TTG ...

LQA ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
127925 48

TTG ...

LVL ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5