Transcript 43973 | MetamORF

Transcript

ID CARD

MetamORF ID

43973

ENSMUST00000137656

Name

Spout1-205

Strand

Biotype

processed_transcript

Start-end positions

30174931-30177965

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:227695

Aliases

9930028P05,
AL033358, CENP-32, D2Wsu81e,
ENSMUSG00000039660, MGI:106544, NCBI:227695,
OFF:Spout1, Spout1

Chr 2

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
117467	96	GTG ...	VKI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1166917	63	CTG ...	LPR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
46436	138	CTG ...	LPG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
46892	33	GTG ...	VFD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
46493	48	GTG ...	VDE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Testis, v6-5
47700	36	GTG ...	VVF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
47755	39	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
45381	150	CTG ...	LSV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Testis
1370506	102	ATG ...	MQD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1368316	39	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
43972	123	CTG ...	LDN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5
731038	63	GTG ...	VEG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	v6-5
49306	144	GTG ...	VAL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Testis
96220	84	GTG ...	VSS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1636842	75	TTG ...	LGH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
47974	90	GTG ...	VEG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
48426	87	CTG ...	LAG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Testis, v6-5

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