Transcript 43817 | MetamORF

Transcript

ID CARD

MetamORF ID

43817

ENSMUST00000129333

Name

Hspa5-203

Strand

Biotype

retained_intron

Start-end positions

34774847-34775615

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:14828

Aliases

AL022860,
AU019543, baffled, Bip,
D2Wsu141e, D2Wsu17e, ENSMUSG00000026864,
Grp78, Hsce70, Hspa5,
mBiP, MGI:95835, NCBI:14828,
OFF:Hspa5, SEZ-7, Sez7

Chr 2

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
49454	165	CTG ...	LLD ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Spleen_B_cell, Testis
43816	105	CTG ...	LIP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Spleen_B_cell, Testis
412218	42	ACG ...	TTP ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	C2C12
48066	63	CTG ...	LWY ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Testis
48305	87	GTG ...	VVP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Testis
45403	72	TTG ...	LQV ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Spleen_B_cell, Testis
1723665	87	CTG ...	LIN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
48012	30	TTG ...	LVL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Spleen_B_cell, Testis
412578	102	ATT ...	IPR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	C2C12
46233	48	ATG ...	MFV ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Testis
47477	171	CTG ...	LVL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Testis
46546	51	TTG ...	LMF ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Spleen_B_cell, Testis
15418	66	GTG ...	VIW ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Spleen_B_cell, Testis
49484	126	GTG ...	VGG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Testis

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