Transcript 4304 | MetamORF

Transcript

ID CARD

MetamORF ID

4304

ENSMUST00000150675

Name

Uqcrc2-205

Strand

Biotype

processed_transcript

Start-end positions

120635240-120643217

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

NCBI:67003

Aliases

1500004O06Rik,
ENSMUSG00000030884, MGI:1914253, NCBI:67003,
OFF:Uqcrc2, Uqcrc2

Chr 7

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
877557	96	CTG ...	LYL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
4429	60	GTG ...	VTA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Skin_tumor
227184	138	CTG ...	LSR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Liver
1025748	51	TTG ...	LFC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
72395	126	TTG ...	LLL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver
226397	156	CTG ...	LEN ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver
221951	171	TTG ...	LVI ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver
426508	300	TTG ...	LTT ...	Ribo-seq	TTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
422806	42	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Neutrophil
211147	66	GTG ...	VRS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain
1564000	156	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
593119	39	TTG ...	LGS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
222242	123	TTG ...	LFV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Liver
4303	60	ATG ...	MRT ...	Ribo-seq	ATG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver, Skin_tumor
424663	63	CTG ...	LEE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
425696	93	TTG ...	LPR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF
534565	39	CTG ...	LSA ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Neutrophil
224770	156	CTG ...	LLN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
75502	108	ATG ...	MLL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver
228505	168	GTG ...	VIA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver
840776	33	CTG ...	LQQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
1258500	84	AGG ...	RLK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14

Export data